Will I have to remove the cabin sole to do this? I have never had a boat before with all these sealed compartments
For many access points we needed for bilge wiring runs, (former) fuel hose run, and the bilge pumps, yes we did have to remove the teak plugs and then remove the screws to lift out each sole piece.
Not sure what is mean't by Sealed Compartments, but I wonder if reference is being made to the various parts of the TAFG, which is the internal bracing structure of your boat (?)
Note that there are several divergent schools of thought on running wires directly to the positive terminal of the battery, and bypassing the main switch and/or high-current breaker.
Surveyors and Insurers much prefer a main battery switch that really de-enegizes all the DC circuits, in case of fire. We do still have some sense wires, fused, that go to the battery terminal, tho. (sigh)